BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB036D09SP1|AL430225
(842 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1663 1392 0.0
>3x_Contig1663
Length = 13533
Score = 1392 bits (691), Expect = 0.0
Identities = 804/842 (95%), Gaps = 11/842 (1%)
Strand = Plus / Minus
Query: 1 catcatcagttattgccggwcattttagaggttgaaagctttcctaatggtgggtaaagc 60
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 5737 catcatcagttattgccggacattttagaggttgaaagctttcc-aatggtgggtaaagc 5679
Query: 61 cttgatcgctgasctagtsaaaatkggtcatactccctaaggaaatgccttcaagatcgg 120
|||||||||||| ||||| ||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 5678 cttgatcgctgagctagtgaaaatgggtcatactccc-aaggaaatgccttcaagatcgg 5620
Query: 121 ctgcgttaatgggatttgtagagtcaatgcagagtggcatgctgttagtcgatctatttg 180
|| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
Sbjct: 5619 -tg-gttaatgggatttgtagagtcaatgcagagtggcatgctgttagt-gat-tattgg 5564
Query: 181 tgcgcaaaagggcgcattgctgcagcgatgtgagttaccagttkgtccctgtatcctkat 240
|||||||||| |||||||||||||||||||||| ||||||| ||||||||||||| ||
Sbjct: 5563 --cgcaaaaggg-gcattgctgcagcgatgtgagtaaccagttggtccctgtatcctgat 5507
Query: 241 ttttgcatgamcttttctctagtatatatmtmamttttcacagaatwacgttcttgtatt 300
|||||||||| |||||||||||||||||| | | |||||||||||| |||||||||||||
Sbjct: 5506 ttttgcatgaacttttctctagtatatatataaattttcacagaataacgttcttgtatt 5447
Query: 301 kttcatcgtattaatgttgcgcgacaccacaagccaaacattttcccgctastttgaaac 360
|||||||||||||||||||| || | |||||||||||||||||||||| ||||||||
Sbjct: 5446 gttcatcgtattaatgttgcggagcaacccaagccaaacattttcccgctagtttgaaac 5387
Query: 361 gtcactgtcgtkcgtttakttttgtcactatatcacgtgatcsggttttgttatttttct 420
||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 5386 gtcactgtcgtgcgtttagttttgtcactatatcacgtgatcgggttttgttatttttct 5327
Query: 421 gttctttctkctccgctgttcgtgttcgcgaacttcgtgaaacatttgaatgtttcatga 480
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5326 gttctttctgctccgctgttcgtgttcgcgaacttcgtgaaacatttgaatgtttcatga 5267
Query: 481 gagctttatttggatcaaaaatctgatctatcttaaacacactagtgaataaacgaagaa 540
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 5266 gagctttatttggatcaaaaatctgatctat-ttaaacacactagtgaataaacgaagaa 5208
Query: 541 cacgccaaaaaagctatcaaaaatagggatctttaatcttcaatcataaaaccatcatag 600
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5207 cacgccaaaaaag-tatcaaaaatagggatctttaatcttcaatcataaaaccatcatag 5149
Query: 601 accatgagtgaaaaaaagcctctgcctcaaccgccgtttgaagaraacacatgtaattat 660
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 5148 accatgagtgaaaaaaagcctctgcctcaaccgccgtttgaagaaaacacatgtaattat 5089
Query: 661 actaaagaggatgtwagactcggtaagaaaacaaagcgcgatggcgatgacgctgatgat 720
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5088 actaaagaggatgttagactcggtaagaaaacaaagcgcgatggcgatgacgctgatgat 5029
Query: 721 gaattcgaattctttcacgaatttcagagagaaaaggtgagakcattaattcatttgatt 780
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 5028 gaattcgaattctttcacgaatttcagagagaaaaggtgagatcattaattcatttgatt 4969
Query: 781 accaacgaactgaaattgaatggttttgaaacagaatatctgtttctgccatttagacct 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4968 accaacgaactgaaattgaatggttttgaaacagaatatctgtttctgccatttagacct 4909
Query: 841 ga 842
||
Sbjct: 4908 ga 4907
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.714 1.32
Gapped
Lambda K H
1.40 0.714 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5372
Number of Sequences: 1807
Number of extensions: 5372
Number of successful extensions: 140
Number of sequences better than 1.0e-20: 1
length of query: 842
length of database: 10,358,551
effective HSP length: 16
effective length of query: 826
effective length of database: 10,329,639
effective search space: 8532281814
effective search space used: 8532281814
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.2 bits)
S1: 12 (24.7 bits)
S2: 50 (101.2 bits)